CrowDsourcing COndensate Database & Encyclopedia @cdcode_org
CD-CODE is a comprehensive, manually-curated database for biomolecular condensates and proteins developed by @agnestothp 's lab. https://t.co/tndWt4I6TJ cd-code.org Dresden, Germany Joined March 2022-
Tweets36
-
Followers94
-
Following24
-
Likes14
We're really excited that CD-CODE is now cross-referenced by @uniprot and has already been included in the latest release: uniprot.org/release-note... Spreading knowledge about #biomolecular #condensates 🥳 🦋more news from us: bsky.app/profile/cdcode…
The latest release was supported by the #condesathon joined by MPI-CBG condensate community🤩 Big #thankyou to all the participants for your support and enthusiasm!💜 more news from us: bsky.app/profile/cdcode…
☀️summer is here - and so is CD-CODE v1.10 release! 💡CD-CODE has now 719 manually curated #condensates 💡Check out new #condensates and updated #protein - condensate connections at cd-code.org #Bioinformatics #DatabaseUpdate #cdcode bsky.app/profile/cdcode…
The latest April release of @uniprot cross-links biomolecular condensate entries to CD-CODE. uniprot.org/release-notes/… For example, one can see that Protein Q9VD51 is a member of the Nucleolus uniprot.org/uniprotkb/Q9VD… @cdcode_org @agnestothp
🍃CD-CODE update v1.09 is here!🍃 👀Check out the new #biomolecular #condensates at cd-code.org 👀We're continuing to update #Protein - #condensate connections and resolve issues! Join us on🦋 to follow more regular updates: cdcode.bsky.social
Our PICNIC tool predicts condensate-proteins regardless of their structural disorder across organisms @NatureComms. Congratulations to @AHadarovich for developing the algorithm and to Hari @HymanLab for the experiments! @mpicbg @csbdresden @PoLDresden nature.com/articles/s4146…
✨Winter CD-CODE update to v1.08!✨ ❄️ New #biomolecular #condensates added (total ⚪: 680) ❄️ #Protein - #condensate connections updated ❄️ Species attributes fixed 🤩 👀Check the current version here: cd-code.org Join us as a contributor: cd-code.org/signup
🔊Calling the hive mind of the #Condensate Community: Join us in curating the CD-CODE! Do you have a favorite condensate or have discovered one that’s not yet in CD-CODE? We want your input and expertise!🧠 🔗Easy sign-up here: cd-code.org/signup Add a new condensate ⤵️
☝️SG is one of the most populous condensate in CD-CODE, with human (cd-code.org/condensate/DEE…) and yeast (cd-code.org/condensate/E03…) proteomes being the most characterized up to date! Are you a stress granule expert or enthusiast? 🦉Join us as a curator: cd-code.org/signup
Various species have different Stress Granule proteomes: 🔵Translationally stalled mRNAs, 🔵translation initiation factors, 🔵RNA-binding proteins, and 🔵non-RNA-binding proteins are among the main constituents of SGs.
🚨October Condensate of the Month is Stress Granule! #StressGranules (#SGs) are dynamically forming cytoplasmic condensates that form in response to various cellular stresses. 🤩In CD-CODE there are more than 10 species and more than 1300 #protein associations described for SGs.
📚Read more about +TIP body and its proteins: doi.org/10.1371/journa… nature.com/articles/s4155… nature.com/articles/s4155…
These condensates concentrate proteins needed for growing tip of the #microtubule. +TIP bodies have been described in... ...🐁mammalian cells (Wu et al., 2021), ...🧪S. pombe (Maan, Reese &Volkov et al., 2023), ...🧪S. cerevisiae (Meier, Farcas &Kumar et al., 2023 @LabBarral
💫September Condensate of the Month is +TIP body!💫 These #condensates form at the growing plus end of #microtubules, crucial for cell division and transport.🦠🧫 : cd-code.org/condensate/909… Check out the protein composition of +TIPs in different organisms ⤵️
New Season 🍂🌿 - new #CDCODE release! 🥳Version 1.07 is here: cd-code.org 🌟We focused on improving #species attributions and updating missing #condensate features. Help us with your condensate expertise!🧠 Join us to become a contributor: cd-code.org/signup
📚Read more about MARDO and its proteins: doi.org/10.1093/nar/gk… doi.org/10.1007/s00018… science.org/doi/10.1126/sc… 3/3
🔵MARDO is a #membraneless compartment that stores maternal mRNAs, important for early embryonic development. ZAR1, an RNA-binding protein with an intrinsically disordered region (#IDR), plays a major role in MARDO assembly and facilitates clustering with #mitochondria. 2/3
🌟Excited to introduce #MARDO as CD-CODE August "Condensate of the Month"!🌟 MARDO stands for Mitochondria-Associated RNA DOmain: cd-code.org/condensate/089… 💡It was first discovered and described by Cheng et al. @SchuhLab in #mammalian (mouse, bovine and human) #oocyte. 1/3🧵⤵️
📢We've just updated CD-CODE to v1.06!🎉 ✨11 new #condensates integrated (total: 670) ✨ 21 new #proteins associated (total: 9672) ✨ 24 condensate-protein attributes updated 👀Check the current version here: cd-code.org #DatabaseUpdate #NewRelease #Bioinformatics
CD-Code has been updated to v1.05: ✨ 14 new condensates integrated, making a total of 659 condensates ✨ 14 new proteins associated, make a total of 9651 proteins ✨ 34 condensate/protein attributes updated Visit our website here: cd-code.org
Om Prakash @baizalla
4K Followers 3K Following Broad interests in Cell Wall, Soft matter, Biophysics, Mathematics, Philosophy, Evolution and History.
Wittmann Lab @Wittmann_Lab
1 Followers 6 Following Protein Disorder in Transcription Lab at Institute of Molecular Biology
Brandon Boone @Brandon78447992
104 Followers 255 Following Assistant Professor at Western Carolina University. Teaching students, using epigenetics for plant synthetic biology, and finding new mountain views. 🌱🧬⛰️.
Diego Javier Zea @diegojavierzea
963 Followers 4K Following Associate Professor at Université Paris-Saclay. Interested in protein structure, interactions and evolution, ML and @JuliaLanguage
Xiaowei Jiang @john_jxw
1K Followers 1K Following Computational and evolutionary biologist, studying cancer/virus/microbial evolution. Views my own. https://t.co/sp6pIZELiz
Kajal Mondal @Kajalrmondal
62 Followers 467 Following PhD Student at IIT Kharagpur | RNA Binding Protein | Biomolecular Condensate | Former Farmer | Former Industry labour | First-Gen Academic |
David de Sancho @daviddesancho
537 Followers 2K Following protein folder, father of two at @ehu_kimika & @DIPCehu
Donovan McDonald @dmcdonald242
75 Followers 144 Following PhD candidate in the Duennwald Lab @westernu. Studying tRNA dysfunction and its role in ALS. Born and raised in The Bahamas.
Avilien Dard @AvilienDard
363 Followers 1K Following MSCA Postdoc Fellow in Oxidative Stress Signaling group at VIB-Ugent Center for Plant Systems Biology
Olga Bagrova @olga_the_alga
11 Followers 218 Following A biophysicist from MSU, inspired by the beauty of our universe and eager to explore all its facets.
Sam Husna @samm_husna
67 Followers 356 Following PhD student @UMich | biomolecular condensates, single-molecule imaging/tracking, optical tweezers
Debkanya Sengupta @MessedYogurt
129 Followers 508 Following PhD Researcher @unige_en - Cellular Stress Response to Viral Infection | Former JRF @iitbombay | MTech BSBE @IITKanpur | BS-MS Life Sciences Presidency.
Florian Grebien @florian_grebien
1K Followers 1K Following Cancer-Epi|Genetics|Genomics|Proteomics and Oncogenic Fusion Proteins @vetmedunivienna @StAnna_CCRI @CeMM_News
Santosh Prajapati @santoshph94
45 Followers 530 Following I'm a PhD Student at IISc Bangalore, interested in MD simulation of IDPs using the CG model and studying the phase behaviour of Biomolecular Condensates.
Leticia Gómez @T06174229
6 Followers 333 Following
Scott Dennis @ScottDenni99810
0 Followers 22 Following
David Q. P. Reis @QDavid18982
11 Followers 176 Following PhD candidate at ITQB NOVA and VUB Brussels specializing in supramolecular chemistry. Primarily focused on work here.
Meline Macher @MacherMeline
242 Followers 314 Following PhD candidate at MPI MR in Heidelberg. Molecular/Cell biologist interested in synthetic biology, extracellular vesicles and organoid models.
Megan Mitchem @megan_mitchem
517 Followers 2K Following NSF Graduate Research Fellow | PhD Candidate in the Truman Lab @UNCCharlotte | Investigating Mpk1's role in heat-mediated condensates | #FirstGen🎓#MomLife
Bikash Chandra Swain @bikashphy
838 Followers 4K Following Biophysicist, Interested in Single-Molecule Biophysics, #IDPs. Alumin as postdoc @aznauryan_lab , @iecb_bordeaux 🇫🇷. Ph.D. from @IITISM_DHANBAD 🇮🇳.
Sumit Shil @SumitSh29905877
25 Followers 264 Following Looking for a postdoc position | Nucleic acids | G4, i-motif, triplex | LLPS | Peptide | IDR Proteins | Biochemistry | Cancer biology | Chemical biology
Ajoy Paul @ajoyhdb
288 Followers 1K Following Research Associate ll CSIR-SPM Fellow @maji_lab ll Ph.D. @BSBEIITB @IITBombay ll Biomolecular Condensate 🔬ll Protein Engineering ll Cell & Molecular Biologist.
Rosalind @PewcurseighdsY
8 Followers 527 Following
Zeta Papadimitriou @zeta_papadim
15 Followers 101 Following
Dongheon Lee @DongheonLee3
106 Followers 342 Following Assistant professor at the Department of Chemical & Biomedical Engineering, FAMU-FSU College of Engineering
Aimer G. Diaz @EvolvingVir
831 Followers 3K Following Virus-centered molecular biology, ecology and evolution. PhD student in Plant Virology at @HafrenLab @_SLU
Aniruddha N @anirudd98
64 Followers 301 Following PhD student @IMScChennai, India. (Biology/Physics/Computation)
Rakshana Balaji @Rakshana1702
200 Followers 556 Following CiM-IMPRS Graduate Student | Alumnus @SamratLabMohali @Iisermohali | Biology enthusiast | Avgeek
Heankel Lyons @Heankel_
306 Followers 961 Following Scientist interested in gene regulation by condensates in the 🧠 | Postdoc with Aaron Gitler @Stanford | PhD @UTSW in the Sabari lab | 🇲🇽
Azamat Rizuan @azamat_rizuan
35 Followers 159 Following Ph.D. student @TAMUEngineering | M.S. @CUSEAS | Computational Biophysics, Multiscale Modelling |
malay mondal @Malay_mandol
33 Followers 375 Following Graduate Student @SourthernMiss || Neurodegeneration || Biomolecular Condensates ||
Jingyue Jia Cassano @JiaJingyue
76 Followers 149 Following Cell biologist, lysosome enthusiast, cellular response to lysosomal damage. Assistant professor, Women in Sience, fan of painting, baking and crocheting...
Gaurav Chauhan @gaurav_utk
197 Followers 965 Following Assistant Professor, Chemical Engineering, IIT Indore, Former Postdoc at WashU, St. Louis. PhD from University of Tennessee, Knoxville.
嶋村悠 (Hisashi Sh... @mamushi1953
56 Followers 220 Following きょうだいろくねんめ。きゅうだいいちねんめ。せいめいとぶんし 6th year student in Kyoto University/Biophysics, Molecule and Life 生命科学研究科修士2回 (吉村研), M2 in GSB
claudio bussi @claudiobussi
1K Followers 1K Following Nanyang Assistant Professor, School of Biological Sciences, NTU-Singapore @claudiobussi.bsky.social
Learnbio @Learnbio1
11 Followers 634 Following
Jack Holland @jackdutch123
342 Followers 1K Following previously PDRA in @OxColloidGroup, interested in soft biological matter. life is for living, not for following rules - that is my only rule.
Mark Chen @MarkChenMDPhD
370 Followers 331 Following PGY-5 @DukeRadOnc | Protein engineering w/Chilkoti lab | Views my own 🇺🇲
Tomo @Tomo_412
104 Followers 2K Following
Priyanka Dogra @PriyankaDogra07
535 Followers 564 Following Postdoc @StJudeStructBio in the @Kriwacki lab PhD graduate of @SamratLabMohali @IiserMohali Extraordinaire interested in IDPs, phase separation & amyloids 👩🔬
Arun Thiruvalluvan @AThiruvalluvan
212 Followers 247 Following Postdoc studies Protein quality control and Protein aggregation @UZH_en. Prev- @reNEW_Global @Univgroningen kampinga lab @UMCG_ERIBA @NCBS_Bangalore
ELIXIR Europe @ELIXIREurope
10K Followers 1K Following Research infrastructure bringing together Europe's #bioinformatics resources. Store, analyse, share, & reuse data
de.NBI / ELIXIR-DE @denbiOffice
3K Followers 103 Following The 'German Network for Bioinformatics Infrastructure – de.NBI' provides bioinformatics services and training courses to users in life sciences research.
UniProt @uniprot
11K Followers 565 Following UniProt is the central hub for the collection of functional information on proteins, with accurate, consistent and rich annotation.
Alf Honigmann @Honigmann_Lab
2K Followers 584 Following Membrane Organization in Cells and Tissue, STED-Microscopy, Biophysics, Reconstitution, 3D Tissue Culture. TU-Dresden and MPI-CBG
Zechner lab @zechnerlab
1K Followers 462 Following Theory lab at SISSA / Trieste. Interested in stochastic processes in biology & biophysics. @zechnerlab.bsky.social
IMPRS-CellDevoSys @imprs_mpicbg
2K Followers 529 Following International Max Planck Research School for Predoctoral researchers in Bio, Physics & Comp Sci. Based at @mpicbg 🔬@csbdresden 🧮, Partner with @digsbb 👯♀️
Buzz Baum's Lab @lab_baum
3K Followers 381 Following We are a cell biology lab studying cell morphogenesis at @LMCB_UCL @ucl & @MRC_LMB @CellBiol_MRCLMB. Tweets by lab members
PhasAGE @PhasAGE_project
675 Followers 269 Following #Twinning project in #PhaseSeparation in #aging & #disease. Funded by the @HorizonEU R&I Programme (GA952334). Tweets reflect only the owner's views.
Nature Methods @naturemethods
155K Followers 1K Following Nature Methods publishes cutting-edge methods, tools, analyses, resources, reviews, news and commentary, supporting life sciences research. Tweets by editors.
Diana Mitrea @DiaMitrea
86 Followers 85 Following
ShorterLab @ShorterLab
13K Followers 7K Following Countering deleterious phase transitions in ALS/FTD, PD, AD, and related disorders @Penn @PennMedicine @bb_upenn @BMBGGUPENN @PGGUPenn @PennNGG @CAMBUpenn
Avinash Patel @Avipatel84
410 Followers 265 Following Head exploratory science @dewpoint_tx| drugging biomolecular condensates | Postdoc phase separation @HymanLab| PhD Cell division @CR_UK| Love cooking & squash
IDPseminars @IDPseminars
3K Followers 110 Following Virtual seminar series focusing on intrinsically disordered proteins. Social media run by @alexholehouse (IDPSeminars by Jackie Pelham and Lucia Chemes)
Center for Systems Bi... @csbdresden
3K Followers 576 Following This channel is inactive. You can find our latest information on our website https://t.co/X0j9ZBnKrh and on Bluesky.
Max Planck Society @maxplanckpress
180K Followers 2K Following Official account of the Max Planck Society. Devoted to basic research in #physics #astronomy #chemistry #biology #mathematics #socialsciences & the #humanities
Physics of Life Dresd... @PoLDresden
4K Followers 91 Following We are the Cluster of Excellence Physics of Life @tudresden_de @DFG_public. Our goal is to unravel the principles underlying the organization of living matter.
Hyman Lab @HymanLab
5K Followers 317 Following Science and fun from the lab of Tony Hyman at the MPI-CBG. Tweets by Hymanlab members. https://t.co/Q3Nqc75cLO
Dewpoint Therapeutics @dewpoint_tx
2K Followers 66 Following The leading biopharmaceutical company translating biomolecular condensates into medicine.
Biomolecular Condensa... @DDCondensates
459 Followers 179 Following Home of DFG-funded RTG 3120 Biomolecular Condensates. Currently recruiting 12 PhD Students to start in April 2026. Apply: https://t.co/jodL2R4UmV
Phase Transition Pape... @Pha_Tran_Papers
4K Followers 2K Following Just an automated literature surveying bot that helps you keep up with phase transition phenomena of bio-matter pro bono. Creator & guardian: @ChingCyan.
MPI-CBG Dresden @mpicbg
14K Followers 1K Following We are no longer active here. You can find our latest information on our website https://t.co/QiEEBE32eY and on Bluesky, Instagram, LinkedIn, and YouTube.
Soumyadeep Ghosh @soumyadeep11194
59 Followers 134 Following
Agnes Toth-Petroczy @agnestothp
603 Followers 166 Following Evolution, proteins, computational biology, @mpicbg @csbdTrends for United States
You might like
